Package org.biojava.nbio.genome.parsers.gff

Interface Summary

Interface	Description
FeatureI	A feature on a sequence (for example, an exon or a gene), defined by a location and a set of attributes encoded as key/value pairs.

Class Summary

Class	Description
Feature	A Feature corresponds to a single row in a GFF file.
FeatureHelper
FeatureList	A list of FeatureI objects implemented using a Java ArrayList; corresponds to a GFF file.
GCStats
GeneIDGFF2Reader	http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
GeneMarkGTFReader	http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
GFF3Reader	http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
GFF3Writer
Location	A location on a sequence.
LocIterator	Move a sliding window over a Location.