Uses of Class
org.biojava.nbio.ontology.OntologyException

Packages that use OntologyException

Package	Description
org.biojava.nbio.ontology
org.biojava.nbio.ontology.io	Tools for loading and saving ontologies.

Uses of OntologyException in org.biojava.nbio.ontology

Subclasses of OntologyException in org.biojava.nbio.ontology

Modifier and Type	Class and Description
class	AlreadyExistsException Thrown to indicate that a term or triple can't be added to an ontology because it is already present.
class	InvalidTermException Thrown to indicate that an ontology term is not acceptable or appropriate in a given context

Methods in org.biojava.nbio.ontology that throw OntologyException

Modifier and Type	Method and Description
Ontology	OntologyFactory.createOntology(String name, String description) Creates a new Ontology

Uses of OntologyException in org.biojava.nbio.ontology.io

Methods in org.biojava.nbio.ontology.io that throw OntologyException

Modifier and Type	Method and Description
Ontology	TabDelimParser.parse(BufferedReader in, OntologyFactory of) Parse an ontology from a reader.