org.biojava.nbio.ontology.io

Class GOParser

java.lang.Object

org.biojava.nbio.ontology.io.GOParser

public class GOParser
extends Object

Simple parser for the Gene Ontology (GO) flatfile format.

Since:

1.4

Author:

Thomas Down

Constructor Summary

Constructors

Constructor and Description
GOParser()

Method Summary

Modifier and Type	Method and Description
Ontology	parseGO(BufferedReader goFile, String ontoName, String ontoDescription, OntologyFactory factory)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GOParser

public GOParser()

Method Detail

parseGO

public Ontology parseGO(BufferedReader goFile,
                        String ontoName,
                        String ontoDescription,
                        OntologyFactory factory)
                 throws ParseException,
                        IOException

Throws:

ParseException

IOException