| Interface | Description | 
|---|---|
| ModificationCondition | Conditions of a protein modification, e.g. | 
| ProteinModification | This interface defines information about a specific protein
 modification. | 
| Class | Description | 
|---|---|
| Component | contains information about a certain Component. | 
| ModificationConditionImpl | |
| ModificationLinkage | |
| ProteinModificationImpl | This class contains information about a specific protein
 modification. | 
| ProteinModificationImpl.Builder | Uses Builder pattern to build a ProteinModification. | 
| ProteinModificationRegistry | This class serves as a instance registry by maintaining
 a pool of ProteinModification instances. | 
| Enum | Description | 
|---|---|
| ModificationCategory | define modification categories. | 
| ModificationOccurrenceType | 
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