Uses of Class
org.biojava.nbio.protmod.structure.StructureAtom

Packages that use StructureAtom

Package	Description
org.biojava.nbio.protmod.io
org.biojava.nbio.protmod.structure

Uses of StructureAtom in org.biojava.nbio.protmod.io

Methods in org.biojava.nbio.protmod.io that return StructureAtom

Modifier and Type	Method and Description
static StructureAtom	StructureAtomXMLConverter.fromXML(Node structureAtomElement)

Methods in org.biojava.nbio.protmod.io with parameters of type StructureAtom

Modifier and Type	Method and Description
static String	StructureAtomXMLConverter.toXML(StructureAtom atom)
static void	StructureAtomXMLConverter.toXML(StructureAtom atom, PrettyXMLWriter xml)

Uses of StructureAtom in org.biojava.nbio.protmod.structure

Methods in org.biojava.nbio.protmod.structure that return StructureAtom

Modifier and Type	Method and Description
StructureAtom	StructureAtomLinkage.getAtom1()
StructureAtom	StructureAtomLinkage.getAtom2()
static StructureAtom	StructureUtil.getStructureAtom(Atom atom, boolean isParentAminoAcid)

Constructors in org.biojava.nbio.protmod.structure with parameters of type StructureAtom

Constructor and Description
StructureAtomLinkage(StructureAtom atom1, StructureAtom atom2, double distance)