Uses of Class
org.biojava.nbio.sequencing.io.fastq.FastqVariant

Packages that use FastqVariant

Package	Description
org.biojava.nbio.sequencing.io.fastq	FASTQ and variants sequence format I/O.

Uses of FastqVariant in org.biojava.nbio.sequencing.io.fastq

Fields in org.biojava.nbio.sequencing.io.fastq declared as FastqVariant

Modifier and Type	Field and Description
static FastqVariant	FastqBuilder.DEFAULT_VARIANT Default FASTQ sequence format variant, FastqVariant.FASTQ_SANGER.

Methods in org.biojava.nbio.sequencing.io.fastq that return FastqVariant

Modifier and Type	Method and Description
FastqVariant	Fastq.getVariant() Return the FASTQ sequence format variant for this FASTQ formatted sequence.
protected FastqVariant	SolexaFastqReader.getVariant()
protected FastqVariant	SangerFastqReader.getVariant()
protected FastqVariant	IlluminaFastqReader.getVariant()
static FastqVariant	FastqVariant.parseFastqVariant(String name) Return the FASTQ sequence format variant with the specified name, if any.
static FastqVariant	FastqVariant.valueOf(String name) Returns the enum constant of this type with the specified name.
static FastqVariant[]	FastqVariant.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.nbio.sequencing.io.fastq with parameters of type FastqVariant

Modifier and Type	Method and Description
static Fastq	FastqTools.convert(Fastq fastq, FastqVariant variant) Convert the specified FASTQ formatted sequence to the specified FASTQ sequence format variant.
Fastq	Fastq.convertTo(FastqVariant variant) Create and return a new FASTQ formatted sequence from this converted to the specified FASTQ sequence format variant.
FastqBuilder	FastqBuilder.withVariant(FastqVariant variant) Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant.