| Package | Description | 
|---|---|
| org.biojava.nbio.structure.align.gui.jmol | Utility methods for better interaction with Jmol. | 
| org.biojava.nbio.structure.gui | 
A few convenience classes to view protein structures with Jmol (if it is on the classpath),
to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. | 
| Modifier and Type | Method and Description | 
|---|---|
| static AtomInfo | AtomInfo. fromString(String atomInfo) | 
| static AtomInfo | AtomInfoParser. parse(String jmolAtomInfo)parses e.g. | 
| Modifier and Type | Method and Description | 
|---|---|
| List<AtomInfo> | SelectionImpl. getSelection() | 
| List<AtomInfo> | Selection. getSelection() | 
| Modifier and Type | Method and Description | 
|---|---|
| void | SelectionImpl. setSelection(List<AtomInfo> selection) | 
| void | Selection. setSelection(List<AtomInfo> selection) | 
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