Uses of Class
org.biojava.nbio.structure.align.helper.AligMatEl

Packages that use AligMatEl

Package	Description
org.biojava.nbio.structure.align.pairwise	Classes for the pairwise alignment of structures.

Uses of AligMatEl in org.biojava.nbio.structure.align.pairwise

Methods in org.biojava.nbio.structure.align.pairwise that return AligMatEl

Modifier and Type	Method and Description
AligMatEl[][]	Alignable.getAligMat()
AligMatEl[][]	StrCompAlignment.getAligMat()
AligMatEl	StrCompAlignment.getAligMat(int i, int j)

Methods in org.biojava.nbio.structure.align.pairwise with parameters of type AligMatEl

Modifier and Type	Method and Description
void	Alignable.setAligMat(AligMatEl[][] alignmentMatrix)
void	StrCompAlignment.setAligMat(AligMatEl[][] al)
void	StrCompAlignment.setAligMat(int i, int j, AligMatEl el)