Uses of Package
org.biojava.nbio.structure.align

Packages that use org.biojava.nbio.structure.align

Package	Description
org.biojava.nbio.structure.align	Classes for the alignment of structures.
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.fatcat	Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
org.biojava.nbio.structure.align.gui
org.biojava.nbio.structure.align.multiple.mc
org.biojava.nbio.structure.align.pairwise	Classes for the pairwise alignment of structures.
org.biojava.nbio.structure.align.seq
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.gui.events	Some event classes for the protein structure GUIs.
org.biojava.nbio.structure.gui.util	Some utility classes for the protein structure GUIs.

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align

Class and Description
StrucAligParameters A class that contains all the parameters of the structure alignment algorithm.
StructureAlignment

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align.ce

Class and Description
AbstractStructureAlignment
StructureAlignment

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align.fatcat

Class and Description
StructureAlignment

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align.gui

Class and Description
FarmJob A job as it can be run on the farm.
MultipleStructureAligner Interface for the Multiple Structure Alignment Algorithms.
StructureAlignment

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align.multiple.mc

Class and Description
MultipleStructureAligner Interface for the Multiple Structure Alignment Algorithms.
StructureAlignment

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align.pairwise

Class and Description
StrucAligParameters A class that contains all the parameters of the structure alignment algorithm.

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.align.seq

Class and Description
AbstractStructureAlignment
StructureAlignment

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.gui

Class and Description
StructurePairAligner Perform a pairwise protein structure superimposition.

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.gui.events

Class and Description
StructurePairAligner Perform a pairwise protein structure superimposition.

Classes in org.biojava.nbio.structure.align used by org.biojava.nbio.structure.gui.util

Class and Description
StructurePairAligner Perform a pairwise protein structure superimposition.