Uses of Package
org.biojava.nbio.structure.align.pairwise

Packages that use org.biojava.nbio.structure.align.pairwise

Package	Description
org.biojava.nbio.structure.align	Classes for the alignment of structures.
org.biojava.nbio.structure.align.pairwise	Classes for the pairwise alignment of structures.
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.gui.util	Some utility classes for the protein structure GUIs.

Classes in org.biojava.nbio.structure.align.pairwise used by org.biojava.nbio.structure.align

Class and Description
AlignmentProgressListener A class to listen to progress of the structure alignment calculations
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentPair a pair of fragments of two protein structures

Classes in org.biojava.nbio.structure.align.pairwise used by org.biojava.nbio.structure.align.pairwise

Class and Description
Alignable
AlignmentResult A class to track the alignment results in a flat file
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentPair a pair of fragments of two protein structures

Classes in org.biojava.nbio.structure.align.pairwise used by org.biojava.nbio.structure.gui

Class and Description
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentPair a pair of fragments of two protein structures

Classes in org.biojava.nbio.structure.align.pairwise used by org.biojava.nbio.structure.gui.util

Class and Description
AlternativeAlignment Implements a class which handles one possible (alternative) solution.