org.biojava.nbio.structure.io

Class CAConverter

java.lang.Object

org.biojava.nbio.structure.io.CAConverter

public class CAConverter
extends Object

Converts full atom representations to Calpha only ones.

Version:

%I% %G%

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
CAConverter()

Method Summary

Modifier and Type	Method and Description
static Chain	getCAOnly(Chain chain) Deprecated. Use the more generic getRepresentativeAtomsOnly(Chain) instead
static List<Chain>	getCAOnly(List<Chain> chains) Deprecated. Use the more generic getRepresentativeAtomsOnly(List) instead
static Chain	getRepresentativeAtomsOnly(Chain chain) Convert a Chain to a new Chain containing C-alpha atoms only.
static List<Chain>	getRepresentativeAtomsOnly(List<Chain> chains) Convert a List of chain objects to another List of chains, containing Representative atoms only.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CAConverter

public CAConverter()

Method Detail

getCAOnly

@Deprecated
public static List<Chain> getCAOnly(List<Chain> chains)

Deprecated. Use the more generic getRepresentativeAtomsOnly(List) instead

Convert a List of chain objects to another List of chains, containing C-alpha atoms only.

Parameters:

chains - list of chains

Returns:

a list of chains

getRepresentativeAtomsOnly

public static List<Chain> getRepresentativeAtomsOnly(List<Chain> chains)

Convert a List of chain objects to another List of chains, containing Representative atoms only.

Parameters:

chains - list of chains

Returns:

a list of chains

Since:

Biojava 4.1.0

getCAOnly

@Deprecated
public static Chain getCAOnly(Chain chain)

Deprecated. Use the more generic getRepresentativeAtomsOnly(Chain) instead

Convert a Chain to a new Chain containing C-alpha atoms only.

Parameters:

chain - to convert

Returns:

a new chain containing Amino acids with C-alpha only.

getRepresentativeAtomsOnly

public static Chain getRepresentativeAtomsOnly(Chain chain)

Convert a Chain to a new Chain containing C-alpha atoms only.

Parameters:

chain - to convert

Returns:

a new chain containing Amino acids with C-alpha only.

Since:

Biojava 4.1.0