org.biojava.nbio.structure.io.mmcif.chem

Class ChemCompTools

java.lang.Object

org.biojava.nbio.structure.io.mmcif.chem.ChemCompTools

public class ChemCompTools
extends Object

Some tools for working with chemical compounds.

Since:

1.7

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
ChemCompTools()

Method Summary

Modifier and Type	Method and Description
static Character	getAminoOneLetter(String chemCompId)
static String	getAminoThreeLetter(Character c)
static Character	getDNAOneLetter(String chemCompId)
static String	getDNATwoLetter(Character c)
static Character	getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)
static boolean	isStandardChemComp(ChemComp cc)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChemCompTools

public ChemCompTools()

Method Detail

getAminoOneLetter

public static Character getAminoOneLetter(String chemCompId)

getDNAOneLetter

public static Character getDNAOneLetter(String chemCompId)

getAminoThreeLetter

public static String getAminoThreeLetter(Character c)

getDNATwoLetter

public static String getDNATwoLetter(Character c)

isStandardChemComp

public static final boolean isStandardChemComp(ChemComp cc)

getOneLetterCode

public static Character getOneLetterCode(ChemComp cc,
                                         ChemicalComponentDictionary dictionary)