org.biojava.nbio.structure.rcsb

Class GetRepresentatives

java.lang.Object

org.biojava.nbio.structure.rcsb.GetRepresentatives

public class GetRepresentatives
extends Object

TODO Move this to Representatives.

Constructor Summary

Constructors

Constructor and Description
GetRepresentatives()

Method Summary

Modifier and Type	Method and Description
static SortedSet<String>	getAll() Returns the current list of all PDB IDs.
static SortedSet<StructureName>	getRepresentatives(int sequenceIdentity) Returns a representative set of PDB protein chains at the specified sequence identity cutoff.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GetRepresentatives

public GetRepresentatives()

Method Detail

getRepresentatives

public static SortedSet<StructureName> getRepresentatives(int sequenceIdentity)

Returns a representative set of PDB protein chains at the specified sequence identity cutoff. See http://www.pdb.org/pdb/statistics/clusterStatistics.do for more information.

Parameters:

sequenceIdentity - sequence identity threshold

Returns:

PdbChainKey set of representatives

getAll

public static SortedSet<String> getAll()

Returns the current list of all PDB IDs.

Returns:

PdbChainKey set of all PDB IDs.