| Package | Description |
|---|---|
| org.biojava.nbio.structure.align.client |
This package deals with the server communication for auto-downloading pre-calculated alignments.
|
| org.biojava.nbio.structure.align.util | |
| org.biojava.nbio.structure.gui.util |
Some utility classes for the protein structure GUIs.
|
| org.biojava.nbio.structure.scop |
Parsers and API for SCOP, Structural Classification of Proteins.
|
| org.biojava.nbio.structure.scop.server |
| Class and Description |
|---|
| ScopDatabase
General API how to interact with SCOP
|
| ScopDomain
Container for the information for a domain.
|
| Class and Description |
|---|
| ScopDatabase
General API how to interact with SCOP
|
| ScopDomain
Container for the information for a domain.
|
| Class and Description |
|---|
| ScopDatabase
General API how to interact with SCOP
|
| Class and Description |
|---|
| Astral.AstralSet
An ASTRAL sequence-identity cutoff with an identifier such as:
|
| LocalScopDatabase
Classes which implement ScopDatabase in a way which allows them to serve queries
without accessing the internet should implement this interface instead.
|
| ScopCategory
The various categories provided by SCOP.
|
| ScopDatabase
General API how to interact with SCOP
|
| ScopDescription
Contains data from
dir.des.scop.txt_1.75
|
| ScopDomain
Container for the information for a domain.
|
| ScopInstallation
This class provides access to the SCOP protein structure classification.
|
| ScopIOException
Indicates that an I/O error occurred with SCOP lazy initialization.
|
| ScopMirror
Helper class to store paths to the four SCOP files
The string "%s" is replaced with the version number.
|
| ScopNode |
| Class and Description |
|---|
| ScopDescription
Contains data from
dir.des.scop.txt_1.75
|
| ScopDomain
Container for the information for a domain.
|
| ScopNode |
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