org.biojava.nbio.structure.secstruc

Class SecStrucInfo

java.lang.Object

org.biojava.nbio.structure.secstruc.SecStrucInfo

Direct Known Subclasses:

SecStrucState

public class SecStrucInfo
extends Object

Container for the secondary structure information of a single residue. This class is designed to be stored inside an Amino Acid object. It can also contain a back-reference to its parent AA.

Since:

4.1.1

Author:

Aleix Lafita

Field Summary

Fields

Modifier and Type	Field and Description
protected String	assignment
static String	BIOJAVA_ASSIGNMENT Secondary strucuture calculated and assigned by DSSP of BioJava
static String	DSSP_ASSIGNMENT Secondary strucuture parsed from a DSSP output file
protected Group	parent
static String	PDB_AUTHOR_ASSIGNMENT Secondary strucuture assigned by the PDB author
protected SecStrucType	type

Constructor Summary

Constructors

Constructor and Description
SecStrucInfo(Group g, String ass, SecStrucType t)

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object o)
String	getAssignment()
Group	getGroup()
SecStrucType	getType()
void	setType(SecStrucType t)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

PDB_AUTHOR_ASSIGNMENT

public static final String PDB_AUTHOR_ASSIGNMENT

Secondary strucuture assigned by the PDB author

See Also:

Constant Field Values

DSSP_ASSIGNMENT

public static final String DSSP_ASSIGNMENT

Secondary strucuture parsed from a DSSP output file

See Also:

Constant Field Values

BIOJAVA_ASSIGNMENT

public static final String BIOJAVA_ASSIGNMENT

Secondary strucuture calculated and assigned by DSSP of BioJava

See Also:

Constant Field Values

type

protected SecStrucType type

assignment

protected String assignment

parent

protected Group parent

Constructor Detail

SecStrucInfo

public SecStrucInfo(Group g,
                    String ass,
                    SecStrucType t)

Method Detail

getType

public SecStrucType getType()

setType

public void setType(SecStrucType t)

getAssignment

public String getAssignment()

getGroup

public Group getGroup()

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object