org.biojava.nbio.structure.symmetry.analysis

Class CalcBioAssemblySymmetry

java.lang.Object

org.biojava.nbio.structure.symmetry.analysis.CalcBioAssemblySymmetry

public class CalcBioAssemblySymmetry
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static String	build
static String	version

Constructor Summary

Constructors

Constructor and Description
CalcBioAssemblySymmetry(Structure bioAssembly, QuatSymmetryParameters parameters)

Method Summary

Modifier and Type	Method and Description
QuatSymmetryParameters	getParameters()
RotationGroup	getRotationGroup() Deprecated.
JmolSymmetryScriptGenerator	getScriptGenerator()
Subunits	getSubunits()
String	getSymmetry() String representation of Symmetry, e.g.
QuatSymmetryDetector	orient()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

version

public static String version

build

public static String build

Constructor Detail

CalcBioAssemblySymmetry

public CalcBioAssemblySymmetry(Structure bioAssembly,
                               QuatSymmetryParameters parameters)

Method Detail

getParameters

public QuatSymmetryParameters getParameters()

orient

public QuatSymmetryDetector orient()

getRotationGroup

@Deprecated
public RotationGroup getRotationGroup()

Deprecated.

Only works if this is not helical symmetry. Deprecated, use getSymmetry instead

getSubunits

public Subunits getSubunits()

getSymmetry

public String getSymmetry()

String representation of Symmetry, e.g. C1, C2, H

Returns:

getScriptGenerator

public JmolSymmetryScriptGenerator getScriptGenerator()