public static enum CESymmParameters.SymmetryType extends Enum<CESymmParameters.SymmetryType>
All internal symmetry cases share one property: all the repeats have the same 3D transformation.
AUTO option automatically identifies the type. The criterion for classification is that the CLOSE symmetry generates CeSymm alignments with circular permutations (2 blocks in AFPChain), whereas the OPEN symmetry generates alignments without a CP (only one block in AFPChain).
Modifier and Type | Field and Description |
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static CESymmParameters.SymmetryType |
DEFAULT |
Modifier and Type | Method and Description |
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static CESymmParameters.SymmetryType |
valueOf(String name)
Returns the enum constant of this type with the specified name.
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static CESymmParameters.SymmetryType[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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public static final CESymmParameters.SymmetryType CLOSED
public static final CESymmParameters.SymmetryType OPEN
public static final CESymmParameters.SymmetryType AUTO
public static final CESymmParameters.SymmetryType DEFAULT
public static CESymmParameters.SymmetryType[] values()
for (CESymmParameters.SymmetryType c : CESymmParameters.SymmetryType.values()) System.out.println(c);
public static CESymmParameters.SymmetryType valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is nullCopyright © 2000–2016 BioJava. All rights reserved.