org.biojava.nbio.structure.symmetry.internal

Class GraphComponentOrderDetector

java.lang.Object

org.biojava.nbio.structure.symmetry.internal.GraphComponentOrderDetector

All Implemented Interfaces:

OrderDetector

public class GraphComponentOrderDetector
extends Object
implements OrderDetector

The GraphOrderDetector transforms the self-alignment into a Graph and extracts its maximally connected Components.

The order reported is the one that maximizes the number of residues aligned, i.e. the highest order (component size) times the frequency of the Component.

Since:

4.2.0

Author:

Aleix Lafita

Constructor Summary

Constructors

Constructor and Description
GraphComponentOrderDetector()

Method Summary

Modifier and Type	Method and Description
int	calculateOrder(AFPChain selfAlignment, Atom[] ca)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GraphComponentOrderDetector

public GraphComponentOrderDetector()

Method Detail

calculateOrder

public int calculateOrder(AFPChain selfAlignment,
                          Atom[] ca)
                   throws RefinerFailedException

Specified by:

calculateOrder in interface OrderDetector

Throws:

RefinerFailedException