Uses of Class
org.biojava.nbio.structure.symmetry.internal.CESymmParameters

Packages that use CESymmParameters

Package	Description
org.biojava.nbio.structure.symmetry.gui
org.biojava.nbio.structure.symmetry.internal

Uses of CESymmParameters in org.biojava.nbio.structure.symmetry.gui

Methods in org.biojava.nbio.structure.symmetry.gui that return CESymmParameters

Modifier and Type	Method and Description
CESymmParameters	SymmetryGui.getParameters()

Uses of CESymmParameters in org.biojava.nbio.structure.symmetry.internal

Methods in org.biojava.nbio.structure.symmetry.internal that return CESymmParameters

Modifier and Type	Method and Description
CESymmParameters	CESymmParameters.clone()
CESymmParameters	CeSymmResult.getParams()

Methods in org.biojava.nbio.structure.symmetry.internal with parameters of type CESymmParameters

Modifier and Type	Method and Description
protected static CeSymmResult	CeSymm.align(Atom[] atoms, CESymmParameters params)
static CeSymmResult	CeSymm.analyze(Atom[] atoms, CESymmParameters params) Analyze the symmetries of the input Atom array using the provided parameters.
static CeSymmResult	CeSymm.analyzeLevel(Atom[] atoms, CESymmParameters params) Analyze a single level of symmetry.
void	CeSymmResult.setParams(CESymmParameters params)

Constructors in org.biojava.nbio.structure.symmetry.internal with parameters of type CESymmParameters

Constructor and Description
CeSymmIterative(CESymmParameters param) For the iterative algorithm to work properly the refinement and optimization options should be turned on, because the alignment has to be consistent at every recursive step.