public interface RemotePairwiseAlignmentService
Modifier and Type | Method and Description |
---|---|
InputStream |
getAlignmentResults(String rid,
RemotePairwiseAlignmentOutputProperties out)
Getting the actual alignment results from this instantiated service for a given ID with specific
formatting parameters held in a RemotePairwiseAlignmentOutputProperties-implemented object.
|
boolean |
isReady(String id,
long present)
Simple method to check if the specified request has been completed by the service used.
|
String |
sendAlignmentRequest(Sequence<Compound> seq,
RemotePairwiseAlignmentProperties rpa)
Doing the actual analysis on the instantiated service using specified parameters and the RichSequence object
|
String |
sendAlignmentRequest(String str,
RemotePairwiseAlignmentProperties rpa)
Doing the actual analysis on the instantiated service using specified parameters on the string representation
of the Sequence object
|
String sendAlignmentRequest(Sequence<Compound> seq, RemotePairwiseAlignmentProperties rpa) throws Exception
Exception
String sendAlignmentRequest(String str, RemotePairwiseAlignmentProperties rpa) throws Exception
Exception
boolean isReady(String id, long present) throws Exception
id
- :an ID for an alignment requestpresent
- :a long integer value representing the actual timeException
- if the ID does not exist.InputStream getAlignmentResults(String rid, RemotePairwiseAlignmentOutputProperties out) throws Exception
rid
- :a String with the request ID for this single alignment runout
- :a RemotePairwiseAlignmentOutputProperties with the specific output instructions.InputStream
with the actual alignment resultsException
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