Package | Description |
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org.biojava.nbio.alignment |
Modifier and Type | Method and Description |
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static Alignments.PairwiseSequenceScorerType |
Alignments.PairwiseSequenceScorerType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static Alignments.PairwiseSequenceScorerType[] |
Alignments.PairwiseSequenceScorerType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
static <S extends Sequence<C>,C extends Compound> |
Alignments.getAllPairsScorers(List<S> sequences,
Alignments.PairwiseSequenceScorerType type,
GapPenalty gapPenalty,
SubstitutionMatrix<C> subMatrix)
|
static <S extends Sequence<C>,C extends Compound> |
Alignments.getAllPairsScores(List<S> sequences,
Alignments.PairwiseSequenceScorerType type,
GapPenalty gapPenalty,
SubstitutionMatrix<C> subMatrix)
|
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