org.biojava.nbio.alignment.template

Class CallableProfileProfileAligner<S extends Sequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.alignment.template.CallableProfileProfileAligner<S,C>

Type Parameters:

S - each Sequence of the Profile pair is of type S

C - each element of an AlignedSequence is a Compound of type C

All Implemented Interfaces:

Callable<ProfilePair<S,C>>

public class CallableProfileProfileAligner<S extends Sequence<C>,C extends Compound>
extends Object
implements Callable<ProfilePair<S,C>>

Implements a concurrency wrapper for a ProfileProfileAligner.

Author:

Mark Chapman

Constructor Summary

Constructors

Constructor and Description
CallableProfileProfileAligner(ProfileProfileAligner<S,C> ppa) Creates a profile-profile alignment task for simplified parallel execution.

Method Summary

Modifier and Type	Method and Description
ProfilePair<S,C>	call()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CallableProfileProfileAligner

public CallableProfileProfileAligner(ProfileProfileAligner<S,C> ppa)

Creates a profile-profile alignment task for simplified parallel execution.

Parameters:

ppa - already initialized profile-profile aligner

Method Detail

call

public ProfilePair<S,C> call()

Specified by:

call in interface Callable<ProfilePair<S extends Sequence<C>,C extends Compound>>