| Package | Description | 
|---|---|
| org.biojava.nbio.structure.align.gui | |
| org.biojava.nbio.structure.align.gui.aligpanel | |
| org.biojava.nbio.structure.align.gui.jmol | Utility methods for better interaction with Jmol. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | AlignmentTextPanel | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | AligPanelA JPanel that can display an AFPChain in a nice way and interact with Jmol. | 
| class  | MultipleAligPanelA JPanel that can display the sequence alignment of a
  MultipleAlignmentin a nice way and interact with Jmol by
 selecting the aligned atoms of the  sequence selection. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | JmolPanel | 
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