| Package | Description | 
|---|---|
| org.biojava.nbio.structure.align.helper | 
 Helper classes for structural alignment. 
 | 
| org.biojava.nbio.structure.align.pairwise | 
 Classes for the pairwise alignment of structures. 
 | 
| Class and Description | 
|---|
| IndexPair | 
| Class and Description | 
|---|
| AligMatEl | 
| IndexPair | 
| JointFragments
 A utility class that defines which set of atoms are considered
 to be on equivalent positions. 
 | 
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