Uses of Class
org.biojava.nbio.structure.cath.CathDomain

Packages that use CathDomain

Package	Description
org.biojava.nbio.structure.cath

Uses of CathDomain in org.biojava.nbio.structure.cath

Methods in org.biojava.nbio.structure.cath that return CathDomain

Modifier and Type	Method and Description
CathDomain	CathInstallation.getDescriptionByCathId(String cathId)
CathDomain	CathDatabase.getDescriptionByCathId(String cathId) Return CATH description for CATH domain ID.
CathDomain	CathInstallation.getDescriptionByNodeId(String nodeId)
CathDomain	CathDatabase.getDescriptionByNodeId(String nodeId) Return CATH description for node representative by node ID.
CathDomain	CathInstallation.getDomainByCathId(String cathId)
CathDomain	CathDatabase.getDomainByCathId(String cathId) Return CATH domain for CATH domain ID.

Methods in org.biojava.nbio.structure.cath that return types with arguments of type CathDomain

Modifier and Type	Method and Description
List<CathDomain>	CathInstallation.filterByCathCode(String query)
List<CathDomain>	CathDatabase.filterByCathCode(String query) Return list of CATH descriptions whose CATH codes (e.g. 1.4.6.10) start with the query.
List<CathDomain>	CathInstallation.filterByDescription(String query)
List<CathDomain>	CathDatabase.filterByDescription(String query) Return list of CATH descriptions whose descriptions (name field) starts with the query.
List<CathDomain>	CathInstallation.filterByNodeName(String query)
List<CathDomain>	CathDatabase.filterByNodeName(String query) Return list of CATH domains whose node name (e.g.
List<CathDomain>	CathInstallation.getByCategory(CathCategory category)
List<CathDomain>	CathDatabase.getByCategory(CathCategory category) Return list of CATH descriptions for node representatives at a CATH category (e.g.
List<CathDomain>	CathInstallation.getDomainsByNodeId(String nodeId)
List<CathDomain>	CathDatabase.getDomainsByNodeId(String nodeId) Return all CATH domains for a particular CATH node.
List<CathDomain>	CathInstallation.getDomainsForPdb(String pdbId)
List<CathDomain>	CathDatabase.getDomainsForPdb(String pdbId) Return all CATH domains for a PDB ID.

Methods in org.biojava.nbio.structure.cath with parameters of type CathDomain

Modifier and Type	Method and Description
List<CathNode>	CathInstallation.getTree(CathDomain domain)
List<CathNode>	CathDatabase.getTree(CathDomain domain) Return the CATH sub-tree for a particular domain.