org.biojava.nbio.structure.symmetry.core

Class ProteinSequenceClusterer

java.lang.Object

org.biojava.nbio.structure.symmetry.core.ProteinSequenceClusterer

public class ProteinSequenceClusterer
extends Object

Represents a set of non-identical protein sequences.

Constructor Summary

Constructors

Constructor and Description
ProteinSequenceClusterer(Structure structure, QuatSymmetryParameters parameters)
ProteinSequenceClusterer(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)

Method Summary

Modifier and Type	Method and Description
int	getNucleicAcidChainCount()
int	getProteinChainCount()
List<SequenceAlignmentCluster>	getSequenceAlignmentClusters()
static void	sortSequenceClustersBySize(List<SequenceAlignmentCluster> clusters)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinSequenceClusterer

public ProteinSequenceClusterer(Structure structure,
                                QuatSymmetryParameters parameters)

ProteinSequenceClusterer

public ProteinSequenceClusterer(Structure structure1,
                                Structure structure2,
                                QuatSymmetryParameters parameters)

Method Detail

getSequenceAlignmentClusters

public List<SequenceAlignmentCluster> getSequenceAlignmentClusters()

getProteinChainCount

public int getProteinChainCount()

getNucleicAcidChainCount

public int getNucleicAcidChainCount()

Returns:

the nucleicAcidChainCount

sortSequenceClustersBySize

public static void sortSequenceClustersBySize(List<SequenceAlignmentCluster> clusters)