Uses of Class
org.biojava.nbio.structure.symmetry.core.Subunits

Packages that use Subunits

Package	Description
org.biojava.nbio.structure.symmetry.analysis
org.biojava.nbio.structure.symmetry.core

Uses of Subunits in org.biojava.nbio.structure.symmetry.analysis

Methods in org.biojava.nbio.structure.symmetry.analysis that return Subunits

Modifier and Type	Method and Description
Subunits	CalcBioAssemblySymmetry.getSubunits()

Uses of Subunits in org.biojava.nbio.structure.symmetry.core

Methods in org.biojava.nbio.structure.symmetry.core that return Subunits

Modifier and Type	Method and Description
Subunits	RotationAxisAligner.getSubunits()
Subunits	HelixAxisAligner.getSubunits()
abstract Subunits	AxisAligner.getSubunits()
Subunits	QuatSymmetryResults.getSubunits() Returns protein subunit information that was used to determine symmetry information

Methods in org.biojava.nbio.structure.symmetry.core with parameters of type Subunits

Modifier and Type	Method and Description
static QuatSymmetryResults	QuatSymmetryDetector.calcQuatSymmetry(Subunits subunits, QuatSymmetryParameters parameters)
static QuatSymmetryScores	QuatSuperpositionScorer.calcScores(Subunits subunits, javax.vecmath.Matrix4d transformation, List<Integer> permutation) Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
boolean	Subunits.contains(Subunits subunits)
boolean	Subunits.overlaps(Subunits subunits)

Constructors in org.biojava.nbio.structure.symmetry.core with parameters of type Subunits

Constructor and Description
C2RotationSolver(Subunits subunits, QuatSymmetryParameters parameters)
HelicalRepeatUnit(Subunits subunits)
HelixExtender(Subunits subunits, Helix helix)
HelixSolver(Subunits subunits, int fold, QuatSymmetryParameters parameters)
QuatSymmetryResults(Subunits subunits, HelixLayers helixLayers, String method)
QuatSymmetryResults(Subunits subunits, RotationGroup rotationGroup, String method)
RotationSolver(Subunits subunits, QuatSymmetryParameters parameters)
SystematicSolver(Subunits subunits, QuatSymmetryParameters parameters)