Uses of Class
org.biojava.nbio.alignment.io.StockholmStructure

Packages that use StockholmStructure

Package	Description
org.biojava.nbio.alignment.io

Uses of StockholmStructure in org.biojava.nbio.alignment.io

Methods in org.biojava.nbio.alignment.io that return StockholmStructure

Modifier and Type	Method and Description
StockholmStructure	StockholmFileParser.parse(InputStream inStream) parses InputStream and returns a the first contained alignment in a StockholmStructure object.
StockholmStructure	StockholmFileParser.parse(String filename) Parses a Stockholm file and returns a StockholmStructure object with its content.

Methods in org.biojava.nbio.alignment.io that return types with arguments of type StockholmStructure

Modifier and Type	Method and Description
List<StockholmStructure>	StockholmFileParser.parse(InputStream inStream, int max) parses an InputStream and returns at maximum max objects contained in that file.
List<StockholmStructure>	StockholmFileParser.parse(String filename, int max) Parses a Stockholm file and returns a StockholmStructure object with its content.
List<StockholmStructure>	StockholmFileParser.parseNext(int max) Tries to parse and return as maximum as max structures in the last used file or input stream.