org.biojava.nbio.core.alignment.template

Enum Profile.StringFormat

java.lang.Object

java.lang.Enum<Profile.StringFormat>

org.biojava.nbio.core.alignment.template.Profile.StringFormat

All Implemented Interfaces:

Serializable, Comparable<Profile.StringFormat>

Enclosing interface:

Profile<S extends Sequence<C>,C extends Compound>

public static enum Profile.StringFormat
extends Enum<Profile.StringFormat>

List of output formats.

Enum Constant Summary

Enum Constants

Enum Constant and Description
ALN
CLUSTALW
FASTA
GCG
MSF
PDBWEB

Method Summary

Modifier and Type	Method and Description
static Profile.StringFormat	valueOf(String name) Returns the enum constant of this type with the specified name.
static Profile.StringFormat[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

ALN

public static final Profile.StringFormat ALN

CLUSTALW

public static final Profile.StringFormat CLUSTALW

FASTA

public static final Profile.StringFormat FASTA

GCG

public static final Profile.StringFormat GCG

MSF

public static final Profile.StringFormat MSF

PDBWEB

public static final Profile.StringFormat PDBWEB

Method Detail

values

public static Profile.StringFormat[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Profile.StringFormat c : Profile.StringFormat.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Profile.StringFormat valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null