org.biojava.nbio.core.search.io.blast

Class BlastHitBuilder

java.lang.Object

org.biojava.nbio.core.search.io.blast.BlastHitBuilder

public class BlastHitBuilder
extends Object

Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:

Paolo Pavan

Constructor Summary

Constructors

Constructor and Description
BlastHitBuilder()

Method Summary

Modifier and Type	Method and Description
org.biojava.nbio.core.search.io.blast.BlastHit	createBlastHit()
BlastHitBuilder	setHitAccession(String hitAccession)
BlastHitBuilder	setHitDef(String hitDef)
BlastHitBuilder	setHitId(String hitId)
BlastHitBuilder	setHitLen(int hitLen)
BlastHitBuilder	setHitNum(int hitNum)
BlastHitBuilder	setHitSequence(Sequence s)
BlastHitBuilder	setHsps(List<Hsp> hsps)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastHitBuilder

public BlastHitBuilder()

Method Detail

setHitNum

public BlastHitBuilder setHitNum(int hitNum)

setHitId

public BlastHitBuilder setHitId(String hitId)

setHitDef

public BlastHitBuilder setHitDef(String hitDef)

setHitAccession

public BlastHitBuilder setHitAccession(String hitAccession)

setHitLen

public BlastHitBuilder setHitLen(int hitLen)

setHitSequence

public BlastHitBuilder setHitSequence(Sequence s)

setHsps

public BlastHitBuilder setHsps(List<Hsp> hsps)

createBlastHit

public org.biojava.nbio.core.search.io.blast.BlastHit createBlastHit()