org.biojava.nbio.core.sequence.compound

Class RNACompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.RNACompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

Direct Known Subclasses:

AmbiguityRNACompoundSet

public class RNACompoundSet
extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:

Andy Yates

Constructor Summary

Constructors

Constructor and Description
RNACompoundSet()

Method Summary

Modifier and Type	Method and Description
static RNACompoundSet	getRNACompoundSet()
NucleotideCompound	newNucleotideCompound(String base, String complement, String... equivalents)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RNACompoundSet

public RNACompoundSet()

Method Detail

getRNACompoundSet

public static RNACompoundSet getRNACompoundSet()

newNucleotideCompound

public NucleotideCompound newNucleotideCompound(String base,
                                                String complement,
                                                String... equivalents)

Specified by:

newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>