org.biojava.nbio.core.sequence.location

Class InsdcLocations

java.lang.Object

org.biojava.nbio.core.sequence.location.InsdcLocations

public class InsdcLocations
extends Object

A collection of locations which are used whenever we work with INSDC; some of which could be deprecated (from INSDC's point of view) yet appear in records.

Author:

ayates, Paolo Pavan

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	InsdcLocations.BondLocation Used to represent bond locations equivalent to bond(7,8) or bond(7).
static class	InsdcLocations.GroupLocation Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined.
static class	InsdcLocations.OneOfLocation Deprecated in INSDC; refers to a set of locations of which one location could be valid e.g. one-of(location, location, location).
static class	InsdcLocations.OrderLocation Used to describe a 5' to 3' ordering but no firm assurance it is correct

Constructor Summary

Constructors

Constructor and Description
InsdcLocations()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InsdcLocations

public InsdcLocations()