SimplePoint (biojava 5.0.0 API)

java.lang.Object
- org.biojava.nbio.core.sequence.location.SimplePoint

All Implemented Interfaces:

Serializable, Comparable<Point>, Point

Direct Known Subclasses:

FuzzyPoint
```
public class SimplePoint
extends Object
implements Serializable, Point
```
Basic implementation of the Point interface.

Author:

ayates

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Point
  Point.Resolver<T extends Point>

Constructor Summary

Constructors
Modifier	Constructor and Description
`protected`	`SimplePoint()`
	`SimplePoint(int position)`
	`SimplePoint(int position, boolean unknown, boolean uncertain)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`Point`	`clonePoint()` Returns a copy of this point
`int`	`compareTo(Point o)`
`boolean`	`equals(Object obj)`
`Integer`	`getPosition()` Returns the position held by this object
`int`	`hashCode()`
`boolean`	`isHigher(Point point)` Returns true if the point is higher in value to the current point
`boolean`	`isLower(Point point)` Returns true if the current point is at a lower position than the point given.
`boolean`	`isUncertain()` Returns a true if the exact point is unknown.
`boolean`	`isUnknown()` Returns true if the current position is unknown but is beyond the position encoded for.
`Point`	`offset(int distance)` Returns a new point offset by the given distance
`Point`	`reverse(int length)` Returns the equivalent position on the reverse strand
`protected int`	`reverse(int position, int length)`
`protected void`	`setPosition(int position)`
`protected void`	`setUncertain(boolean uncertain)`
`protected void`	`setUnknown(boolean unknown)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - SimplePoint
```
protected SimplePoint()
```
  - SimplePoint
```
public SimplePoint(int position)
```
  - SimplePoint
```
public SimplePoint(int position,
                   boolean unknown,
                   boolean uncertain)
```
- Method Detail
  - getPosition
```
public Integer getPosition()
```
    Description copied from interface: Point
    
    Returns the position held by this object
    
    Specified by:
    
    getPosition in interface Point
  - setPosition
```
protected void setPosition(int position)
```
  - isUnknown
```
public boolean isUnknown()
```
    Description copied from interface: Point
    Returns true if the current position is unknown but is beyond the position encoded for. This is the same as the position
```
>80
```
    as encoded by UniProt.
    Specified by:
    
    isUnknown in interface Point
  - setUnknown
```
protected void setUnknown(boolean unknown)
```
  - isUncertain
```
public boolean isUncertain()
```
    Description copied from interface: Point
    Returns a true if the exact point is unknown. Equivalent position from UniProt is
```
?80
```
    .
    Specified by:
    
    isUncertain in interface Point
  - setUncertain
```
protected void setUncertain(boolean uncertain)
```
  - reverse
```
public Point reverse(int length)
```
    Description copied from interface: Point
    
    Returns the equivalent position on the reverse strand
    
    Specified by:
    
    reverse in interface Point
    
    Parameters:
    
    length - Length of the sequence to translate to
  - offset
```
public Point offset(int distance)
```
    Description copied from interface: Point
    
    Returns a new point offset by the given distance
    
    Specified by:
    
    offset in interface Point
  - reverse
```
protected int reverse(int position,
                      int length)
```
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - compareTo
```
public int compareTo(Point o)
```
    Specified by:
    
    compareTo in interface Comparable<Point>
  - isLower
```
public boolean isLower(Point point)
```
    Description copied from interface: Point
    
    Returns true if the current point is at a lower position than the point given.
    
    Specified by:
    
    isLower in interface Point
  - isHigher
```
public boolean isHigher(Point point)
```
    Description copied from interface: Point
    
    Returns true if the point is higher in value to the current point
    
    Specified by:
    
    isHigher in interface Point
  - clonePoint
```
public Point clonePoint()
```
    Description copied from interface: Point
    
    Returns a copy of this point
    
    Specified by:
    
    clonePoint in interface Point

Class SimplePoint

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Point

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SimplePoint

SimplePoint

SimplePoint

Method Detail

getPosition

setPosition

isUnknown

setUnknown

isUncertain

setUncertain

reverse

offset

reverse

equals

hashCode

toString

compareTo

isLower

isHigher

clonePoint