org.biojava.nbio.core.sequence.template

Interface SequenceReader<C extends Compound>

All Superinterfaces:

Accessioned, Iterable<C>, Sequence<C>

All Known Subinterfaces:

ProxySequenceReader<C>

All Known Implementing Classes:

ArrayListProxySequenceReader, ArrayListSequenceReader, BitSequenceReader, FourBitSequenceReader, GenbankProxySequenceReader, JoiningSequenceReader, RnaSequenceView, SequenceFileProxyLoader, SingleCompoundSequenceReader, StringProxySequenceReader, TwoBitSequenceReader, UniprotProxySequenceReader

public interface SequenceReader<C extends Compound>
extends Sequence<C>

Method Summary

Modifier and Type	Method and Description
void	setCompoundSet(CompoundSet<C> compoundSet)
void	setContents(String sequence)

Methods inherited from interface org.biojava.nbio.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Methods inherited from interface java.lang.Iterable

forEach, iterator, spliterator

Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned

getAccession

Method Detail

setCompoundSet

void setCompoundSet(CompoundSet<C> compoundSet)

setContents

void setContents(String sequence)
          throws CompoundNotFoundException

Throws:

CompoundNotFoundException