Uses of Class
org.biojava.nbio.genome.parsers.genename.ChromPos

Packages that use ChromPos

Package	Description
org.biojava.nbio.genome.util

Uses of ChromPos in org.biojava.nbio.genome.util

Methods in org.biojava.nbio.genome.util that return ChromPos

Modifier and Type	Method and Description
static ChromPos	ChromosomeMappingTools.getChromosomePosForCDScoordinate(int cdsNucleotidePosition, GeneChromosomePosition chromPos) Maps the position of a CDS nucleotide back to the genome
static ChromPos	ChromosomeMappingTools.getChromPosForward(int cdsPos, List<Integer> exonStarts, List<Integer> exonEnds, int cdsStart, int cdsEnd) Get the CDS position mapped onto the chromosome position
static ChromPos	ChromosomeMappingTools.getChromPosReverse(int cdsPos, List<Integer> exonStarts, List<Integer> exonEnds, int cdsStart, int cdsEnd) Get the CDS position mapped on the chromosome position