org.biojava.nbio.structure.align.ce

Class CeSideChainMain

java.lang.Object

org.biojava.nbio.structure.align.AbstractStructureAlignment

org.biojava.nbio.structure.align.ce.CeMain

org.biojava.nbio.structure.align.ce.CeSideChainMain

All Implemented Interfaces:

StructureAlignment

public class CeSideChainMain
extends CeMain
implements StructureAlignment

Field Summary

Fields

Modifier and Type	Field and Description
static String	algorithmName

Fields inherited from class org.biojava.nbio.structure.align.ce.CeMain

calculator, params

Fields inherited from class org.biojava.nbio.structure.align.AbstractStructureAlignment

newline

Constructor Summary

Constructors

Constructor and Description
CeSideChainMain()

Method Summary

Modifier and Type	Method and Description
String	getAlgorithmName() Get the name of the Algorithm
ConfigStrucAligParams	getParameters() Return the paramers for this algorithm.
String	getVersion() Get the Version information for this Algorithm.
static void	main(String[] args)
void	setParameters(ConfigStrucAligParams params) Set the default parameters for this algorithm to use

Methods inherited from class org.biojava.nbio.structure.align.ce.CeMain

align, align, getCECalculator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.nbio.structure.align.StructureAlignment

align, align

Field Detail

algorithmName

public static final String algorithmName

See Also:

Constant Field Values

Constructor Detail

CeSideChainMain

public CeSideChainMain()

Method Detail

main

public static void main(String[] args)
                 throws ConfigurationException

Throws:

ConfigurationException

getAlgorithmName

public String getAlgorithmName()

Description copied from interface: StructureAlignment

Get the name of the Algorithm

Specified by:

getAlgorithmName in interface StructureAlignment

Overrides:

getAlgorithmName in class CeMain

Returns:

the name of the algorithm

getParameters

public ConfigStrucAligParams getParameters()

Description copied from interface: StructureAlignment

Return the paramers for this algorithm.

Specified by:

getParameters in interface StructureAlignment

Overrides:

getParameters in class CeMain

Returns:

The returned object will be a Java bean.

setParameters

public void setParameters(ConfigStrucAligParams params)

Description copied from interface: StructureAlignment

Set the default parameters for this algorithm to use

Specified by:

setParameters in interface StructureAlignment

Overrides:

setParameters in class CeMain

getVersion

public String getVersion()

Description copied from interface: StructureAlignment

Get the Version information for this Algorithm.

Specified by:

getVersion in interface StructureAlignment

Overrides:

getVersion in class CeMain

Returns:

the version of the algorithm