Uses of Class
org.biojava.nbio.structure.align.ce.CeParameters.ScoringStrategy

Packages that use CeParameters.ScoringStrategy

Package	Description
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.

Uses of CeParameters.ScoringStrategy in org.biojava.nbio.structure.align.ce

Fields in org.biojava.nbio.structure.align.ce declared as CeParameters.ScoringStrategy

Modifier and Type	Field and Description
static CeParameters.ScoringStrategy	CeParameters.ScoringStrategy.DEFAULT_SCORING_STRATEGY
protected CeParameters.ScoringStrategy	CeParameters.scoringStrategy
protected CeParameters.ScoringStrategy	CeUserArgumentProcessor.CeStartupParams.scoringStrategy

Methods in org.biojava.nbio.structure.align.ce that return CeParameters.ScoringStrategy

Modifier and Type	Method and Description
CeParameters.ScoringStrategy	CeParameters.getScoringStrategy()
CeParameters.ScoringStrategy	CeUserArgumentProcessor.CeStartupParams.getScoringStrategy()
static CeParameters.ScoringStrategy	CeParameters.ScoringStrategy.valueOf(String name) Returns the enum constant of this type with the specified name.
static CeParameters.ScoringStrategy[]	CeParameters.ScoringStrategy.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.nbio.structure.align.ce with parameters of type CeParameters.ScoringStrategy

Modifier and Type	Method and Description
void	CeParameters.setScoringStrategy(CeParameters.ScoringStrategy scoringStrategy) Set the scoring strategy to use. 0 is default CE scoring scheme. 1 uses Side chain orientation.
void	CeUserArgumentProcessor.CeStartupParams.setScoringStrategy(CeParameters.ScoringStrategy scoringStrategy)