org.biojava.nbio.structure.align.fatcat.calc

Class FatCatAligner

java.lang.Object

org.biojava.nbio.structure.align.fatcat.calc.FatCatAligner

public class FatCatAligner
extends Object

A class that does calculations on an AFPChain

Author:

Andreas Prlic

Field Summary

Fields

Modifier and Type	Field and Description
static boolean	debug
static boolean	printTimeStamps

Constructor Summary

Constructors

Constructor and Description
FatCatAligner()

Method Summary

Modifier and Type	Method and Description
void	align(Atom[] ca1, Atom[] ca2, boolean doRigid, FatCatParameters params)
AFPChain	getAfpChain()
Group[]	getTwistedGroups()
void	setTwistedGroups(Group[] twistedGroups)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

debug

public static final boolean debug

See Also:

Constant Field Values

printTimeStamps

public static final boolean printTimeStamps

See Also:

Constant Field Values

Constructor Detail

FatCatAligner

public FatCatAligner()

Method Detail

getAfpChain

public AFPChain getAfpChain()

getTwistedGroups

public Group[] getTwistedGroups()

setTwistedGroups

public void setTwistedGroups(Group[] twistedGroups)

align

public void align(Atom[] ca1,
                  Atom[] ca2,
                  boolean doRigid,
                  FatCatParameters params)
           throws StructureException

Throws:

StructureException