Package org.biojava.nbio.structure.align.fatcat

Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.

See: Description

Class Summary

Class	Description
FatCat
FatCatFlexible
FatCatRigid
FatCatUserArgumentProcessor

Package org.biojava.nbio.structure.align.fatcat Description

Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT. FATCAT reference:

 Yuzhen Ye & Adam Godzik (2003)
 Flexible structure alignment by chaining aligned fragment pairs allowing twists.
 Bioinformatics vol.19 suppl. 2. ii246-ii255.
 

see also:

 Andreas Prlic; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
 Pre-calculated protein structure alignments at the RCSB PDB website
 Bioinformatics 26: 2983-2985