Package org.biojava.nbio.structure.align.gui

Interface Summary

Interface	Description
AlignmentCalculationRunnable

Class Summary

Class	Description
AboutDialog
AlignmentCalc	A class that obtains two structures via DAS and aligns them This is done in a separate thread.
AlignmentCalcDB
AlignmentGui	A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload.
AlignmentTextPanel
ChooseDirAction	Ask the user to provide a directory containting PDB files.
ConfigPDBInstallPanel
DBResultTable
DBSearchGUI
DisplayAFP	A utility class for visualistion of structure alignments
DotPlotPanel	Displays the dot plot trace for an alignment.
GUIAlignmentProgressListener	a GUI that allows to watch progress as multiple alignments are being processed.
GUIFarmJobRunnable
HelpDialog
JPrintPanel
MemoryMonitor	Tracks Memory allocated & used, displayed in graph form.
MenuCreator	Create the menus for structure alignment GUI windows (JFrames).
MenuCreator.DotPlotListener	Creates a frame to display a DotPlotPanel.
MultipleAlignmentCalc	A class that obtains structures via DAS and aligns them.
MultipleAlignmentGUI	A JFrame that allows to trigger a multiple structure alignment, either from files in a directory or after manual upload.
MultipleAlignmentJmolDisplay	Utility Class that provides helper methods for the visualization of MultipleAlignments.
MyAlignmentLoadListener	Loads an alignment in an XML format and displays its content in a new Jmol panel.
MyDistMaxListener	Shows the interatomic Distance Matrices of all the Structures aligned in different Frames.
MyExportListener
MyOpenPdbFileListener
MySaveFileListener	Save an alignment to a specified File by the user.
MyTableRowSorter
ParameterGUI	UI for ConfigStrucAligParams, for the AlignmentGUI.
SelectPDBPanel	A Panel that allows user to specify PDB & chain ID, as well as sub-ranges
ShowPDBIDListener
StructureAlignmentDisplay
StructureLoaderThread
SystemInfo