org.biojava.nbio.structure.align.util

Class AFPChainScorer

java.lang.Object

org.biojava.nbio.structure.align.util.AFPChainScorer

public class AFPChainScorer
extends Object

Constructor Summary

Constructors

Constructor and Description
AFPChainScorer()

Method Summary

Modifier and Type	Method and Description
static double	getTMScore(AFPChain align, Atom[] ca1, Atom[] ca2)
static double	getTMScore(AFPChain align, Atom[] ca1, Atom[] ca2, boolean normalizeMin)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AFPChainScorer

public AFPChainScorer()

Method Detail

getTMScore

public static double getTMScore(AFPChain align,
                                Atom[] ca1,
                                Atom[] ca2)
                         throws StructureException

Throws:

StructureException

getTMScore

public static double getTMScore(AFPChain align,
                                Atom[] ca1,
                                Atom[] ca2,
                                boolean normalizeMin)
                         throws StructureException

Throws:

StructureException