Uses of Class
org.biojava.nbio.structure.basepairs.BasePairParameters

Packages that use BasePairParameters

Package	Description
org.biojava.nbio.structure.basepairs

Uses of BasePairParameters in org.biojava.nbio.structure.basepairs

Subclasses of BasePairParameters in org.biojava.nbio.structure.basepairs

Modifier and Type	Class and Description
class	MismatchedBasePairParameters This class allows for finding inter-strand base pairs that are not necessarily canonical Watson-Crick pairs.
class	TertiaryBasePairParameters This class also finds the base pairing and base-pair step parameters but has a broader definition of a base pair so that non-canonical-WC base pairs will be detected and reported.

Methods in org.biojava.nbio.structure.basepairs that return BasePairParameters

Modifier and Type	Method and Description
BasePairParameters	BasePairParameters.analyze() This method is the main function call to extract all step parameters, pairing parameters, and sequence information from the Structure object provided to the constructor.