public enum SubunitClustererMethod extends Enum<SubunitClustererMethod>
Subunit
in the SubunitCluster
.Enum Constant and Description |
---|
SEQUENCE
The SEQUENCE clustering method uses the residue sequence of the
Subunit to calculate sequence alignments. |
SEQUENCE_STRUCTURE
The SEQUENCE_STRUCTURE clustering method uses the residue sequence and the
coordinates of its Atom representatives of the
Subunit to
calculate sequence and structure alignments. |
STRUCTURE
The STRUCTURE clustering method uses the residue sequence and the
coordinates of its Atom representatives of the
Subunit to
calculate sequence and structure alignments. |
Modifier and Type | Method and Description |
---|---|
static SubunitClustererMethod |
valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static SubunitClustererMethod[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final SubunitClustererMethod SEQUENCE
public static final SubunitClustererMethod STRUCTURE
public static final SubunitClustererMethod SEQUENCE_STRUCTURE
Subunit
to
calculate sequence and structure alignments.
Two Subunit
with sufficient sequence identity and coverage are
clustered together. Additionally, two Subunit
with sufficient
structural similarity and coverage are clustered together. If the
sequence and structure clustering differ, the cluster contains
pseudosymmetry (by definition).
public static SubunitClustererMethod[] values()
for (SubunitClustererMethod c : SubunitClustererMethod.values()) System.out.println(c);
public static SubunitClustererMethod valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is nullCopyright © 2000–2018 BioJava. All rights reserved.