org.biojava.nbio.structure.contact

Class GroupContact

java.lang.Object

org.biojava.nbio.structure.contact.GroupContact

All Implemented Interfaces:

Serializable

public class GroupContact
extends Object
implements Serializable

A pair of residues that are in contact

Author:

duarte_j

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
GroupContact()

Method Summary

Modifier and Type	Method and Description
void	addAtomContact(AtomContact atomContact)
List<AtomContact>	getAtomContacts()
List<AtomContact>	getContactsWithinDistance(double distance) Returns the list of atom contacts in this GroupContact that are within the given distance.
double	getMinDistance()
int	getNumAtomContacts()
Pair<Group>	getPair()
void	setPair(Pair<Group> pair)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GroupContact

public GroupContact()

Method Detail

addAtomContact

public void addAtomContact(AtomContact atomContact)

getPair

public Pair<Group> getPair()

setPair

public void setPair(Pair<Group> pair)

getMinDistance

public double getMinDistance()

getNumAtomContacts

public int getNumAtomContacts()

getAtomContacts

public List<AtomContact> getAtomContacts()

getContactsWithinDistance

public List<AtomContact> getContactsWithinDistance(double distance)

Returns the list of atom contacts in this GroupContact that are within the given distance.

Parameters:

distance -

Returns:

toString

public String toString()

Overrides:

toString in class Object