Package org.biojava.nbio.structure.gui.util

Some utility classes for the protein structure GUIs.

See: Description

Interface Summary

Interface	Description
StructurePairSelector	To be implemented by JPanels that are part of the GUI to trigger structure aligmnents.

Class Summary

Class	Description
AlignedPosition
AlignmentCalc	A class that obtains two structures via DAS and aligns them This is done in a separate thread.
AlternativeAlignmentFrame	a frame showing the alternative alignments, which are the result of a structure superimposition
CoordManager	a class that manages the conversion of sequence coordinate system to JPanel drawing coordinates
MenuCreator	Create the menu for BiojavaJmol
PDBDirPanel	A class to define where a structure for the alignment is coming from
PDBServerPanel	A class to define where a structure for the alignment is coming from
PDBUploadPanel	A JPanel to upload 2 custom PDB files.
ScopInstallationInstance
ScopSelectPanel
SelectMultiplePanel	A Text Panel that allows the user to specify multiple structure identifiers, space separated.
SequenceMouseListener	a mouse listener for the AbstractChainRenderer class it listens to all mouse events and triggeres appropriate SequenceListener and FeatureListener events
SequenceScalePanel	A class that draws a Sequence as a rectangle, a scale display over it.

Package org.biojava.nbio.structure.gui.util Description

Some utility classes for the protein structure GUIs. Possible start classes are one level higher at org.biojava.nbio.structure.ngui.BiojavaJmol, and org.biojava.nbio.structure.gui.AlignmentGui.