| Interface | Description |
|---|---|
| ChemCompProvider |
Interface that is implemented by all classes that can provide
ChemComp definitions. |
| MMcifConsumer |
An interface for the events triggered by a MMcifParser.
|
| MMcifParser |
Interface that needs to be implemented by an MMcifParser
|
| Class | Description |
|---|---|
| AllChemCompProvider |
A ChemComp provider that downloads and caches the components.cif file from the wwPDB site.
|
| ChemCompConsumer | |
| ChemCompGroupFactory | |
| ChemicalComponentDictionary |
A representation of the Chemical Component Dictionary.
|
| DownloadChemCompProvider |
This provider of chemical components can download and cache chemical component definition files from the RCSB PDB web site.
|
| MetalBondConsumer |
Created by andreas on 6/9/16.
|
| MetalBondParser |
Created by andreas on 6/6/16.
|
| MMCIFFileTools |
Some tools for mmCIF file writing.
|
| ReducedChemCompProvider |
Unlike the
DownloadChemCompProvider, this ChemCompProvider does not download any chem comp definitions. |
| SimpleMMcifConsumer |
A MMcifConsumer implementation that builds an in-memory representation of the
content of a mmcif file as a BioJava Structure object.
|
| SimpleMMcifParser |
A simple mmCif file parser
Usage:
String file = "path/to/mmcif/file";
StructureIOFile pdbreader = new MMCIFFileReader();
Structure s = pdbreader.getStructure(file);
System.out.println(s);
// you can convert it to a PDB file...
|
| ZipChemCompProvider |
This chemical component provider retrieves and caches chemical component definition files from a
zip archive specified in its construction.
|
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