org.biojava.nbio.structure.scop.server

Class XMLUtil

java.lang.Object

org.biojava.nbio.structure.scop.server.XMLUtil

public class XMLUtil
extends Object

Utility classes for the XML serialization and de-serialization of SCOP.

Since:

3.0.2

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
XMLUtil()

Method Summary

Modifier and Type	Method and Description
static List<String>	getCommentsFromXML(String xml)
static String	getCommentsXML(List<String> comments)
static SortedSet<String>	getDomainRangesFromXML(String xml)
static String	getDomainRangesXML(SortedSet<String> domainRanges)
static SortedSet<Domain>	getDomainsFromXML(String xml)
static String	getDomainsXML(SortedSet<Domain> domains)
static ScopDescription	getScopDescriptionFromXML(String xml)
static String	getScopDescriptionsXML(List<ScopDescription> descriptions)
static String	getScopDescriptionXML(ScopDescription desc)
static ScopDomain	getScopDomainFromXML(String xml)
static String	getScopDomainsXML(List<ScopDomain> domains)
static String	getScopDomainXML(ScopDomain domain)
static ScopNode	getScopNodeFromXML(String xml)
static String	getScopNodesXML(List<ScopNode> nodes)
static String	getScopNodeXML(ScopNode scopNode)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XMLUtil

public XMLUtil()

Method Detail

getScopDescriptionXML

public static String getScopDescriptionXML(ScopDescription desc)

getScopDescriptionFromXML

public static ScopDescription getScopDescriptionFromXML(String xml)

getScopDescriptionsXML

public static String getScopDescriptionsXML(List<ScopDescription> descriptions)

getCommentsXML

public static String getCommentsXML(List<String> comments)

getCommentsFromXML

public static List<String> getCommentsFromXML(String xml)

getScopNodeXML

public static String getScopNodeXML(ScopNode scopNode)

getScopNodeFromXML

public static ScopNode getScopNodeFromXML(String xml)

getScopNodesXML

public static String getScopNodesXML(List<ScopNode> nodes)

getScopDomainXML

public static String getScopDomainXML(ScopDomain domain)

getScopDomainFromXML

public static ScopDomain getScopDomainFromXML(String xml)

getScopDomainsXML

public static String getScopDomainsXML(List<ScopDomain> domains)

getDomainsXML

public static String getDomainsXML(SortedSet<Domain> domains)

getDomainsFromXML

public static SortedSet<Domain> getDomainsFromXML(String xml)

getDomainRangesXML

public static String getDomainRangesXML(SortedSet<String> domainRanges)

getDomainRangesFromXML

public static SortedSet<String> getDomainRangesFromXML(String xml)