Package org.biojava.nbio.structure.secstruc

Class Summary

Class	Description
BetaBridge	Container that represents a beta Bridge between two residues.
DSSPParser	Class to parse a DSSP file (output of the DSSP program), that contains the secondary structure assignment of a structure.
HBond	Container that represents a hidrogen bond.
Ladder	A Ladder is a set of one or more consecutive bridges of identical type.
SecStrucCalc	Calculate and assign the secondary structure (SS) to the Groups of a Structure object.
SecStrucElement	A secondary structure element (SSE) is an object representing a block of sequential residues that share the same secondary structure type.
SecStrucInfo	Container for the secondary structure information of a single residue.
SecStrucState	This class extends the basic container for secondary structure annotation, including all the information used in the DSSP algorithm.
SecStrucTools	This class contains methods for obtaining and converting secondary structure information from BioJava Structures.

Enum Summary

Enum	Description
BridgeType	A bridge is formed by two non-overlapping stretches of three residues each (i-1,i,i+1) and (j-1,j,j+1), where i
SecStrucType	This enum contains all of the secondary structure types found in the DSSP output.