Uses of Package
org.biojava.nbio.structure.symmetry.internal

Packages that use org.biojava.nbio.structure.symmetry.internal

Package	Description
org.biojava.nbio.structure.symmetry.gui
org.biojava.nbio.structure.symmetry.internal
org.biojava.nbio.structure.symmetry.utils

Classes in org.biojava.nbio.structure.symmetry.internal used by org.biojava.nbio.structure.symmetry.gui

Class and Description
CESymmParameters Provides parameters to CeSymm.
CeSymmResult This Class stores all the relevant information of an internal symmetry result obtained with CeSymm.

Classes in org.biojava.nbio.structure.symmetry.internal used by org.biojava.nbio.structure.symmetry.internal

Class and Description
CESymmParameters Provides parameters to CeSymm.
CESymmParameters.OrderDetectorMethod
CESymmParameters.RefineMethod
CESymmParameters.SymmetryType The internal symmetry detection can be divided into two types: CLOSE: includes the circular and dihedral symmetries, and OPEN: includes the helical and protein repeats symmetries.
CeSymmResult This Class stores all the relevant information of an internal symmetry result obtained with CeSymm.
OrderDetector A method to decide the order of symmetry (number of subunits) given a structure self-alignment, calculated by CE-Symm.
RefinerFailedException Refinement of the self-alignment failed.
ResidueGroup A ResidueGroup is a set of residues that are part of a maximally connected component of the self-Alignment Graph in symmetry analysis.
SymmetryAxes Data Structure that stores all the symmetry axis that describe the symmetry of a structure.
SymmetryAxes.Axis Represents an axis of symmetry
SymmetryRefiner Interface for all symmetry refinement implementations.

Classes in org.biojava.nbio.structure.symmetry.internal used by org.biojava.nbio.structure.symmetry.utils

Class and Description
CeSymmResult This Class stores all the relevant information of an internal symmetry result obtained with CeSymm.
SymmetryAxes Data Structure that stores all the symmetry axis that describe the symmetry of a structure.