ModelledSubgroup (biojava 5.0.0 API)

java.lang.Object
- org.biojava.nbio.structure.validation.ModelledSubgroup

public class ModelledSubgroup
extends Object

Java class for anonymous complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType>
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element ref="{}angle-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}clash" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}bond-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <element ref="{}mog-angle-outlier" maxOccurs="unbounded" minOccurs="0"/>
         <choice>
           <element ref="{}symm-clash" maxOccurs="unbounded" minOccurs="0"/>
           <element ref="{}mog-bond-outlier" maxOccurs="unbounded" minOccurs="0"/>
         </choice>
       </sequence>
       <attribute name="NatomsEDS" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="altcode" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="avgoccu" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="chain" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="ent" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="flippable-sidechain" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="icode" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="ligRSRZ" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnbrMean" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnbrStdev" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="ligRSRnumnbrs" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="model" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="mogul-ignore" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="num-H-reduce" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="owab" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="phi" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="psi" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rama" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="resname" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="resnum" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
       <attribute name="rota" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
       <attribute name="rscc" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rsr" use="required" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="rsrz" type="{http://www.w3.org/2001/XMLSchema}decimal" />
       <attribute name="said" use="required" type="{http://www.w3.org/2001/XMLSchema}NCName" />
       <attribute name="seq" use="required" type="{http://www.w3.org/2001/XMLSchema}NMTOKEN" />
     </restriction>
   </complexContent>
 </complexType>

Field Summary

Fields
Modifier and Type	Field and Description
`protected String`	`altcode`
`protected List<AngleOutlier>`	`angleOutlier`
`protected BigDecimal`	`avgoccu`
`protected List<BondOutlier>`	`bondOutlier`
`protected String`	`chain`
`protected List<Clash>`	`clash`
`protected BigInteger`	`ent`
`protected BigInteger`	`flippableSidechain`
`protected String`	`icode`
`protected BigDecimal`	`ligRSRnbrMean`
`protected BigDecimal`	`ligRSRnbrStdev`
`protected BigInteger`	`ligRSRnumnbrs`
`protected BigDecimal`	`ligRSRZ`
`protected BigInteger`	`model`
`protected List<MogAngleOutlier>`	`mogAngleOutlier`
`protected List<MogBondOutlier>`	`mogBondOutlier`
`protected String`	`mogulIgnore`
`protected BigInteger`	`natomsEDS`
`protected BigInteger`	`numHReduce`
`protected BigDecimal`	`owab`
`protected BigDecimal`	`phi`
`protected BigDecimal`	`psi`
`protected String`	`rama`
`protected String`	`resname`
`protected BigInteger`	`resnum`
`protected String`	`rota`
`protected BigDecimal`	`rscc`
`protected BigDecimal`	`rsr`
`protected BigDecimal`	`rsrz`
`protected String`	`said`
`protected String`	`seq`
`protected List<SymmClash>`	`symmClash`

Constructor Summary

Constructors
Constructor and Description

ModelledSubgroup()

Constructors
Constructor and Description
`ModelledSubgroup()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getAltcode()` Gets the value of the altcode property.
`List<AngleOutlier>`	`getAngleOutlier()` Gets the value of the angleOutlier property.
`BigDecimal`	`getAvgoccu()` Gets the value of the avgoccu property.
`List<BondOutlier>`	`getBondOutlier()` Gets the value of the bondOutlier property.
`String`	`getChain()` Gets the value of the chain property.
`List<Clash>`	`getClash()` Gets the value of the clash property.
`BigInteger`	`getEnt()` Gets the value of the ent property.
`BigInteger`	`getFlippableSidechain()` Gets the value of the flippableSidechain property.
`String`	`getIcode()` Gets the value of the icode property.
`BigDecimal`	`getLigRSRnbrMean()` Gets the value of the ligRSRnbrMean property.
`BigDecimal`	`getLigRSRnbrStdev()` Gets the value of the ligRSRnbrStdev property.
`BigInteger`	`getLigRSRnumnbrs()` Gets the value of the ligRSRnumnbrs property.
`BigDecimal`	`getLigRSRZ()` Gets the value of the ligRSRZ property.
`BigInteger`	`getModel()` Gets the value of the model property.
`List<MogAngleOutlier>`	`getMogAngleOutlier()` Gets the value of the mogAngleOutlier property.
`List<MogBondOutlier>`	`getMogBondOutlier()` Gets the value of the mogBondOutlier property.
`String`	`getMogulIgnore()` Gets the value of the mogulIgnore property.
`BigInteger`	`getNatomsEDS()` Gets the value of the natomsEDS property.
`BigInteger`	`getNumHReduce()` Gets the value of the numHReduce property.
`BigDecimal`	`getOwab()` Gets the value of the owab property.
`BigDecimal`	`getPhi()` Gets the value of the phi property.
`BigDecimal`	`getPsi()` Gets the value of the psi property.
`String`	`getRama()` Gets the value of the rama property.
`String`	`getResname()` Gets the value of the resname property.
`BigInteger`	`getResnum()` Gets the value of the resnum property.
`String`	`getRota()` Gets the value of the rota property.
`BigDecimal`	`getRscc()` Gets the value of the rscc property.
`BigDecimal`	`getRsr()` Gets the value of the rsr property.
`BigDecimal`	`getRsrz()` Gets the value of the rsrz property.
`String`	`getSaid()` Gets the value of the said property.
`String`	`getSeq()` Gets the value of the seq property.
`List<SymmClash>`	`getSymmClash()` Gets the value of the symmClash property.
`void`	`setAltcode(String value)` Sets the value of the altcode property.
`void`	`setAvgoccu(BigDecimal value)` Sets the value of the avgoccu property.
`void`	`setChain(String value)` Sets the value of the chain property.
`void`	`setEnt(BigInteger value)` Sets the value of the ent property.
`void`	`setFlippableSidechain(BigInteger value)` Sets the value of the flippableSidechain property.
`void`	`setIcode(String value)` Sets the value of the icode property.
`void`	`setLigRSRnbrMean(BigDecimal value)` Sets the value of the ligRSRnbrMean property.
`void`	`setLigRSRnbrStdev(BigDecimal value)` Sets the value of the ligRSRnbrStdev property.
`void`	`setLigRSRnumnbrs(BigInteger value)` Sets the value of the ligRSRnumnbrs property.
`void`	`setLigRSRZ(BigDecimal value)` Sets the value of the ligRSRZ property.
`void`	`setModel(BigInteger value)` Sets the value of the model property.
`void`	`setMogulIgnore(String value)` Sets the value of the mogulIgnore property.
`void`	`setNatomsEDS(BigInteger value)` Sets the value of the natomsEDS property.
`void`	`setNumHReduce(BigInteger value)` Sets the value of the numHReduce property.
`void`	`setOwab(BigDecimal value)` Sets the value of the owab property.
`void`	`setPhi(BigDecimal value)` Sets the value of the phi property.
`void`	`setPsi(BigDecimal value)` Sets the value of the psi property.
`void`	`setRama(String value)` Sets the value of the rama property.
`void`	`setResname(String value)` Sets the value of the resname property.
`void`	`setResnum(BigInteger value)` Sets the value of the resnum property.
`void`	`setRota(String value)` Sets the value of the rota property.
`void`	`setRscc(BigDecimal value)` Sets the value of the rscc property.
`void`	`setRsr(BigDecimal value)` Sets the value of the rsr property.
`void`	`setRsrz(BigDecimal value)` Sets the value of the rsrz property.
`void`	`setSaid(String value)` Sets the value of the said property.
`void`	`setSeq(String value)` Sets the value of the seq property.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - angleOutlier
```
protected List<AngleOutlier> angleOutlier
```
  - clash
```
protected List<Clash> clash
```
  - bondOutlier
```
protected List<BondOutlier> bondOutlier
```
  - mogAngleOutlier
```
protected List<MogAngleOutlier> mogAngleOutlier
```
  - symmClash
```
protected List<SymmClash> symmClash
```
  - mogBondOutlier
```
protected List<MogBondOutlier> mogBondOutlier
```
  - natomsEDS
```
protected BigInteger natomsEDS
```
  - altcode
```
protected String altcode
```
  - avgoccu
```
protected BigDecimal avgoccu
```
  - chain
```
protected String chain
```
  - ent
```
protected BigInteger ent
```
  - flippableSidechain
```
protected BigInteger flippableSidechain
```
  - icode
```
protected String icode
```
  - ligRSRZ
```
protected BigDecimal ligRSRZ
```
  - ligRSRnbrMean
```
protected BigDecimal ligRSRnbrMean
```
  - ligRSRnbrStdev
```
protected BigDecimal ligRSRnbrStdev
```
  - ligRSRnumnbrs
```
protected BigInteger ligRSRnumnbrs
```
  - model
```
protected BigInteger model
```
  - mogulIgnore
```
protected String mogulIgnore
```
  - numHReduce
```
protected BigInteger numHReduce
```
  - owab
```
protected BigDecimal owab
```
  - phi
```
protected BigDecimal phi
```
  - psi
```
protected BigDecimal psi
```
  - rama
```
protected String rama
```
  - resname
```
protected String resname
```
  - resnum
```
protected BigInteger resnum
```
  - rota
```
protected String rota
```
  - rscc
```
protected BigDecimal rscc
```
  - rsr
```
protected BigDecimal rsr
```
  - rsrz
```
protected BigDecimal rsrz
```
  - said
```
protected String said
```
  - seq
```
protected String seq
```
- Constructor Detail
  - ModelledSubgroup
```
public ModelledSubgroup()
```
- Method Detail
  - getAngleOutlier
```
public List<AngleOutlier> getAngleOutlier()
```
    Gets the value of the angleOutlier property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the angleOutlier property.
    For example, to add a new item, do as follows:
```
    getAngleOutlier().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list AngleOutlier
  - getClash
```
public List<Clash> getClash()
```
    Gets the value of the clash property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the clash property.
    For example, to add a new item, do as follows:
```
    getClash().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list Clash
  - getBondOutlier
```
public List<BondOutlier> getBondOutlier()
```
    Gets the value of the bondOutlier property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the bondOutlier property.
    For example, to add a new item, do as follows:
```
    getBondOutlier().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list BondOutlier
  - getMogAngleOutlier
```
public List<MogAngleOutlier> getMogAngleOutlier()
```
    Gets the value of the mogAngleOutlier property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mogAngleOutlier property.
    For example, to add a new item, do as follows:
```
    getMogAngleOutlier().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list MogAngleOutlier
  - getSymmClash
```
public List<SymmClash> getSymmClash()
```
    Gets the value of the symmClash property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the symmClash property.
    For example, to add a new item, do as follows:
```
    getSymmClash().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list SymmClash
  - getMogBondOutlier
```
public List<MogBondOutlier> getMogBondOutlier()
```
    Gets the value of the mogBondOutlier property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the mogBondOutlier property.
    For example, to add a new item, do as follows:
```
    getMogBondOutlier().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list MogBondOutlier
  - getNatomsEDS
```
public BigInteger getNatomsEDS()
```
    Gets the value of the natomsEDS property.
    
    Returns:
    
    possible object is BigInteger
  - setNatomsEDS
```
public void setNatomsEDS(BigInteger value)
```
    Sets the value of the natomsEDS property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getAltcode
```
public String getAltcode()
```
    Gets the value of the altcode property.
    
    Returns:
    
    possible object is String
  - setAltcode
```
public void setAltcode(String value)
```
    Sets the value of the altcode property.
    
    Parameters:
    
    value - allowed object is String
  - getAvgoccu
```
public BigDecimal getAvgoccu()
```
    Gets the value of the avgoccu property.
    
    Returns:
    
    possible object is BigDecimal
  - setAvgoccu
```
public void setAvgoccu(BigDecimal value)
```
    Sets the value of the avgoccu property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getChain
```
public String getChain()
```
    Gets the value of the chain property.
    
    Returns:
    
    possible object is String
  - setChain
```
public void setChain(String value)
```
    Sets the value of the chain property.
    
    Parameters:
    
    value - allowed object is String
  - getEnt
```
public BigInteger getEnt()
```
    Gets the value of the ent property.
    
    Returns:
    
    possible object is BigInteger
  - setEnt
```
public void setEnt(BigInteger value)
```
    Sets the value of the ent property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getFlippableSidechain
```
public BigInteger getFlippableSidechain()
```
    Gets the value of the flippableSidechain property.
    
    Returns:
    
    possible object is BigInteger
  - setFlippableSidechain
```
public void setFlippableSidechain(BigInteger value)
```
    Sets the value of the flippableSidechain property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getIcode
```
public String getIcode()
```
    Gets the value of the icode property.
    
    Returns:
    
    possible object is String
  - setIcode
```
public void setIcode(String value)
```
    Sets the value of the icode property.
    
    Parameters:
    
    value - allowed object is String
  - getLigRSRZ
```
public BigDecimal getLigRSRZ()
```
    Gets the value of the ligRSRZ property.
    
    Returns:
    
    possible object is BigDecimal
  - setLigRSRZ
```
public void setLigRSRZ(BigDecimal value)
```
    Sets the value of the ligRSRZ property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getLigRSRnbrMean
```
public BigDecimal getLigRSRnbrMean()
```
    Gets the value of the ligRSRnbrMean property.
    
    Returns:
    
    possible object is BigDecimal
  - setLigRSRnbrMean
```
public void setLigRSRnbrMean(BigDecimal value)
```
    Sets the value of the ligRSRnbrMean property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getLigRSRnbrStdev
```
public BigDecimal getLigRSRnbrStdev()
```
    Gets the value of the ligRSRnbrStdev property.
    
    Returns:
    
    possible object is BigDecimal
  - setLigRSRnbrStdev
```
public void setLigRSRnbrStdev(BigDecimal value)
```
    Sets the value of the ligRSRnbrStdev property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getLigRSRnumnbrs
```
public BigInteger getLigRSRnumnbrs()
```
    Gets the value of the ligRSRnumnbrs property.
    
    Returns:
    
    possible object is BigInteger
  - setLigRSRnumnbrs
```
public void setLigRSRnumnbrs(BigInteger value)
```
    Sets the value of the ligRSRnumnbrs property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getModel
```
public BigInteger getModel()
```
    Gets the value of the model property.
    
    Returns:
    
    possible object is BigInteger
  - setModel
```
public void setModel(BigInteger value)
```
    Sets the value of the model property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getMogulIgnore
```
public String getMogulIgnore()
```
    Gets the value of the mogulIgnore property.
    
    Returns:
    
    possible object is String
  - setMogulIgnore
```
public void setMogulIgnore(String value)
```
    Sets the value of the mogulIgnore property.
    
    Parameters:
    
    value - allowed object is String
  - getNumHReduce
```
public BigInteger getNumHReduce()
```
    Gets the value of the numHReduce property.
    
    Returns:
    
    possible object is BigInteger
  - setNumHReduce
```
public void setNumHReduce(BigInteger value)
```
    Sets the value of the numHReduce property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getOwab
```
public BigDecimal getOwab()
```
    Gets the value of the owab property.
    
    Returns:
    
    possible object is BigDecimal
  - setOwab
```
public void setOwab(BigDecimal value)
```
    Sets the value of the owab property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getPhi
```
public BigDecimal getPhi()
```
    Gets the value of the phi property.
    
    Returns:
    
    possible object is BigDecimal
  - setPhi
```
public void setPhi(BigDecimal value)
```
    Sets the value of the phi property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getPsi
```
public BigDecimal getPsi()
```
    Gets the value of the psi property.
    
    Returns:
    
    possible object is BigDecimal
  - setPsi
```
public void setPsi(BigDecimal value)
```
    Sets the value of the psi property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getRama
```
public String getRama()
```
    Gets the value of the rama property.
    
    Returns:
    
    possible object is String
  - setRama
```
public void setRama(String value)
```
    Sets the value of the rama property.
    
    Parameters:
    
    value - allowed object is String
  - getResname
```
public String getResname()
```
    Gets the value of the resname property.
    
    Returns:
    
    possible object is String
  - setResname
```
public void setResname(String value)
```
    Sets the value of the resname property.
    
    Parameters:
    
    value - allowed object is String
  - getResnum
```
public BigInteger getResnum()
```
    Gets the value of the resnum property.
    
    Returns:
    
    possible object is BigInteger
  - setResnum
```
public void setResnum(BigInteger value)
```
    Sets the value of the resnum property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getRota
```
public String getRota()
```
    Gets the value of the rota property.
    
    Returns:
    
    possible object is String
  - setRota
```
public void setRota(String value)
```
    Sets the value of the rota property.
    
    Parameters:
    
    value - allowed object is String
  - getRscc
```
public BigDecimal getRscc()
```
    Gets the value of the rscc property.
    
    Returns:
    
    possible object is BigDecimal
  - setRscc
```
public void setRscc(BigDecimal value)
```
    Sets the value of the rscc property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getRsr
```
public BigDecimal getRsr()
```
    Gets the value of the rsr property.
    
    Returns:
    
    possible object is BigDecimal
  - setRsr
```
public void setRsr(BigDecimal value)
```
    Sets the value of the rsr property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getRsrz
```
public BigDecimal getRsrz()
```
    Gets the value of the rsrz property.
    
    Returns:
    
    possible object is BigDecimal
  - setRsrz
```
public void setRsrz(BigDecimal value)
```
    Sets the value of the rsrz property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getSaid
```
public String getSaid()
```
    Gets the value of the said property.
    
    Returns:
    
    possible object is String
  - setSaid
```
public void setSaid(String value)
```
    Sets the value of the said property.
    
    Parameters:
    
    value - allowed object is String
  - getSeq
```
public String getSeq()
```
    Gets the value of the seq property.
    
    Returns:
    
    possible object is String
  - setSeq
```
public void setSeq(String value)
```
    Sets the value of the seq property.
    
    Parameters:
    
    value - allowed object is String

Class ModelledSubgroup

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

angleOutlier

clash

bondOutlier

mogAngleOutlier

symmClash

mogBondOutlier

natomsEDS

altcode

avgoccu

chain

ent

flippableSidechain

icode

ligRSRZ

ligRSRnbrMean

ligRSRnbrStdev

ligRSRnumnbrs

model

mogulIgnore

numHReduce

owab

phi

psi

rama

resname

resnum

rota

rscc

rsr

rsrz

said

seq

Constructor Detail

ModelledSubgroup

Method Detail

getAngleOutlier

getClash

getBondOutlier

getMogAngleOutlier

getSymmClash

getMogBondOutlier

getNatomsEDS

setNatomsEDS

getAltcode

setAltcode

getAvgoccu

setAvgoccu

getChain

setChain

getEnt

setEnt

getFlippableSidechain

setFlippableSidechain

getIcode

setIcode

getLigRSRZ

setLigRSRZ

getLigRSRnbrMean

setLigRSRnbrMean

getLigRSRnbrStdev

setLigRSRnbrStdev

getLigRSRnumnbrs

setLigRSRnumnbrs

getModel

setModel

getMogulIgnore

setMogulIgnore

getNumHReduce

setNumHReduce

getOwab

setOwab

getPhi

setPhi

getPsi